Jialin Liu

Jialin Liu

Postdoctoral Research Fellow at HHMI & University of Michigan

Software

CytoSignal Permalink

A machine-learning model for detecting the locations and dynamics of cell-cell signaling at cellular resolution from spatial transcriptomic data.

Published in Nature Genetics (2025).

CytoSimplex Permalink

A tool for quantifying and visualizing current cell fate commitment and future cell potential on a simplex.

Published in Bioinformatics (2025).

LIGER Permalink

A machine-learning model for integrating and analyzing multiple single-cell multi-omic datasets, supporting RNA-seq, ATAC-seq, methylation, and spatial modalities.

Published in Nature Protocols (2020).

TopoVelo Permalink

A deep-learning model for jointly modeling temporal gene expression and spatial cellular dynamics from spatial transcriptomic data.

Published in Nature Biotechnology (2025).